Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015901153.1_cds_XP_016451199.1_45578
CDS Infomation

[gene=LOC107775911] [db_xref=GeneID:107775911] [protein=transcription factor EMB1444-like isoform X2] [protein_id=XP_016451199.1] [location=complement(join(156668..156748,157622..157744,157833..157973,158738..158839,158925..160091,160173..160289,160651..160710,164258..164299,164717..164801,165038..165199,165810..165904))] [gbkey=CDS]
Sequence

ATGGCAAGCCAACTGCAACAAGCACTGAGGAGCCTTTGCTGCAACACTCCTTGGAAGTAT
GCTGTGTTTTGGAAGCTCACACATCGAGCTCGGATGATGTTGACTTGGGCGGACGCTTAC
TATGACAATGACGGCTTTCCGGAGAAAAAATCTCCTGGTAGTGCAGCAGGCAACCTTCAT
GATGGATATTATTCCAACAATCGTCTTGGAGTAGCTGTGGCAAAGATGTCGTATCATGTT
TATTCTCTTGGAGAAGGTATTGTAGGGAAGGTGGCAATTACTGGAAAACATTTGTGGCTT
TCAGCGGACAAAGGTGCAACTATCACCAGCTTGGCGCCTGAGCACTGTGATGGGTGGCAA
GCTCAATTTTCTGTTGGTATTAAGACCATCGTTGTTGCTGCAGTTGCTCCACATGGAGTT
GTACAACTTGGATCCTTGGATAGTATTTCTGAGGATTTGAGGGTGGTCAAGCATATTAGA
GATGTCTTTTCTGAGCTCCAGGAGTCGATGGCAAGTTGCTTGCAGAGTTCGATGCAGAAC
AGCATGGAAAATTCTTGCTTGTCAGAGATATCGACAAGAACCTCAGGTTCAGAGGTTTTT
CAAGTCTGCGTAAATAATCTAGGTAGAAATGTTTGTGAAGATGGGAAAAATATGTGCTCT
CCTCTATATACATCTGTTGAAAAATCTTTTGATCATTCTTGTATCTTCTTGCAACCTGGA
AGTTACCCAAATAAAATACTTGAAGTGGTTAATAAGCAAGGACTTCATGAGACTGCAGTT
CAAGGATCTGGTCACTGCGAGAATCTGCTTCCGCCAAGCTGTGAAAGTTCCCTTATAAAA
CACCAAGAGGAAGGGCAGATTTGGGAAGAAACTAATCCGAAGTTTGAAGGCCAATCTAGC
AACTCGAGAGTCTTGGGAAAGGGCTCAGTAGATGAAACTGAGCCAACTTTTAGGAATAAT
GGAAGTAATGAAAGTGTTTCATATGATGCTGGACAAGTCACCGAACTCACTGTGCCATAT
AAAAACGATCTTTCTTCTGAAGCTTACAATGATCGAAATGGAGTGTTGGGTGTGCCGGAT
CTTCCCAATGCATATCCTGATAAATGTGCTGAGAAAAATTTAGGTTTCGAGACCGAGTGT
AATTACACAATGCACACTCCTTTCAGGTTCTTCGCTGGCTATGAGCTGTTTGAAGCACTA
GGGCCAGTTTTCCAGAAAGGGAATTCTTCCAACGACTGGGAGGCGGAGAACCGGGAAGAA
ATGGCTGTTGAGATGCTTGAGGAAATCGGCACCAGCAGTCTGTTGAAGAGCAGCACTGGC
CATGAGCATCTTCTAGAAGCAGTAATAGCTAATGTTAACCGCCATGATAATGATAGTAGC
AGTGTCAAGTCATTCTGTAAATCTGTTGATTCCCTCTTGACCACTGAAATAACTGCCGAA
CCTTGTAACAGTGATATCGGCACTATCAGTTCTACTGGCTATTCATTTGATCGTGAAACA
TTGAACAGCTTCAACTCATCAGGTATGTGTAGTATTCAGTCTTCGAGAGGTTTTTCATCA
ACCAGTTGTAGCAGAGGTAGTGGACACGTTGAGAGGCCACTTGAACCCACTAAAATGCAT
AAAAAGAGGGCTAGACCTGGTGAAAGTTGCCGACCTAGGCCCAGGGATAGACAATTGATC
CAAGATCGCATCAAGGAGCTCCGTGAGCTGGTTCCAAATGGTTCTAAGTGCAGTATAGAC
TCACTTCTAGAACGAACAATCAAACACATGGTCTTCATGCAAAGTATTACCAAGCATGCT
GACAAGCTAAAGAAATGCTCTGCATCAAAGCTGGTTGACAAGGAATTGGGTATCTCCGGG
TCTTCCTCCCTTGAGCATGGTTCAAGCTGGGCGATGGAAGTTGGAAGTAACCTAAAAGTT
TGTCCTATGAGGGTTGAAAACTTAAGCATGAATGGTCAAATACTTGTAGAAATCTTTGAA
GACGGCAGCCATTTCCTTGACATAGCAGAAGCCATCCGGAGCTTGAATCTTACTATTTTA
AAAGGTGTGGCAGAGGCCTGTGGTGAGAGGACACGTATGTGTTTCGTGGTTGAGGGGCAG
AATGATAGAACCTTGCACCGCATGGATGTATTATGGTCGCTTATGCAGAAACTGCAAGCA
AAGATCAACATGTAG

Peptide Sequence

PEP ID

XP_016451199.1
PEP Infomation

PREDICTED: transcription factor EMB1444-like isoform X2 [Nicotiana tabacum]
Sequence

MASQLQQALRSLCCNTPWKYAVFWKLTHRARMMLTWADAYYDNDGFPEKKSPGSAAGNLH
DGYYSNNRLGVAVAKMSYHVYSLGEGIVGKVAITGKHLWLSADKGATITSLAPEHCDGWQ
AQFSVGIKTIVVAAVAPHGVVQLGSLDSISEDLRVVKHIRDVFSELQESMASCLQSSMQN
SMENSCLSEISTRTSGSEVFQVCVNNLGRNVCEDGKNMCSPLYTSVEKSFDHSCIFLQPG
SYPNKILEVVNKQGLHETAVQGSGHCENLLPPSCESSLIKHQEEGQIWEETNPKFEGQSS
NSRVLGKGSVDETEPTFRNNGSNESVSYDAGQVTELTVPYKNDLSSEAYNDRNGVLGVPD
LPNAYPDKCAEKNLGFETECNYTMHTPFRFFAGYELFEALGPVFQKGNSSNDWEAENREE
MAVEMLEEIGTSSLLKSSTGHEHLLEAVIANVNRHDNDSSSVKSFCKSVDSLLTTEITAE
PCNSDIGTISSTGYSFDRETLNSFNSSGMCSIQSSRGFSSTSCSRGSGHVERPLEPTKMH
KKRARPGESCRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMVFMQSITKHA
DKLKKCSASKLVDKELGISGSSSLEHGSSWAMEVGSNLKVCPMRVENLSMNGQILVEIFE
DGSHFLDIAEAIRSLNLTILKGVAEACGERTRMCFVVEGQNDRTLHRMDVLWSLMQKLQA
KINM

Transcript Sequence

Gene sequence data has not been registered.